Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Neural
Cell type
Brain
MeSH Description
The part of CENTRAL NERVOUS SYSTEM that is contained within the skull (CRANIUM). Arising from the NEURAL TUBE, the embryonic brain is comprised of three major parts including PROSENCEPHALON (the forebrain); MESENCEPHALON (the midbrain); and RHOMBENCEPHALON (the hindbrain). The developed brain consists of CEREBRUM; CEREBELLUM; and other structures in the BRAIN STEM.

Attributes by original data submitter

Sample

strain
C57BL/6
age
3 months
sex
male
tissue
brain
sample_type
primary NPC culture
IP
H3
sample
91

Sequenced DNA Library

library_name
3m5_NPCs_H3_ATCACG
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
8817590
Reads aligned (%)
93.4
Duplicates removed (%)
14.3
Number of peaks
445 (qval < 1E-05)

mm9

Number of total reads
8817590
Reads aligned (%)
93.2
Duplicates removed (%)
14.4
Number of peaks
377 (qval < 1E-05)

Base call quality data from DBCLS SRA