SRX999091
Heart 3m1 K4me3: Sample Heart 3m1 K4me3 CAGATC

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Cardiovascular
Cell type
Heart
MeSH Description
The hollow, muscular organ that maintains the circulation of the blood.

Attributes by original data submitter

Sample

strain
C57BL/6
age
3 months
sex
male
tissue
heart
sample_type
Tissue chunk
IP
H3K4me3
sample
56

Sequenced DNA Library

library_name
Heart_3m1_K4me3_CAGATC
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17238068
Reads aligned (%)
91.4
Duplicates removed (%)
28.1
Number of peaks
19072 (qval < 1E-05)

mm9

Number of total reads
17238068
Reads aligned (%)
91.3
Duplicates removed (%)
28.2
Number of peaks
19044 (qval < 1E-05)

Base call quality data from DBCLS SRA