Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

strain
C57BL/6
age
29 months
sex
male
tissue
liver
sample_type
Tissue chunk
IP
H3K4me3
sample
35

Sequenced DNA Library

library_name
Liver_29m2_K4me3_CTTGTA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
17712249
Reads aligned (%)
91.6
Duplicates removed (%)
32.5
Number of peaks
19141 (qval < 1E-05)

mm9

Number of total reads
17712249
Reads aligned (%)
91.4
Duplicates removed (%)
32.6
Number of peaks
19104 (qval < 1E-05)

Base call quality data from DBCLS SRA