Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Gonad
Cell type
Testis
MeSH Description
The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Attributes by original data submitter

Sample

breed
CD1
strain
wild type
dev_stage
adult
sex
male
tissue
testis
cell_type
pachytene spermatocyte
collection_date
2014-05-01

Sequenced DNA Library

library_name
mouse2_PS_input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
61218853
Reads aligned (%)
94.9
Duplicates removed (%)
16.0
Number of peaks
700 (qval < 1E-05)

mm9

Number of total reads
61218853
Reads aligned (%)
94.5
Duplicates removed (%)
15.9
Number of peaks
812 (qval < 1E-05)

Base call quality data from DBCLS SRA