Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Unclassified

Cell type

Unclassified

NA

NA

Sample

source_name

1818761_B_CTCF_REP1

cell type

B

antibody

CTCF(Millipore, 07-729)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

The ChIP assay were performed as previously described (Cheng et al, 2014, PMCID: PMC4343047) Sequencing libraries were generated using NEBNext UltraII DNA library Prep kit with homemade adaptors

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

61513032

Reads aligned (%)

95.6

Duplicates removed (%)

18.4

Number of peaks

26830 (qval < 1E-05)

hg19

Number of total reads

61513032

Reads aligned (%)

94.8

Duplicates removed (%)

19.5

Number of peaks

26692 (qval < 1E-05)