SRX982497
GSM1652926: H3K27ac LT Off; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
RN2
NA
NA

Attributes by original data submitter

Sample

source_name
Cell line
cell line
RN2
shRNA
Suz12.1842
treatment
Longterm JQ1, 4 days drug withdrawal
diagnosis
Leukemia

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. ChIP-seq libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
62055705
Reads aligned (%)
98.1
Duplicates removed (%)
71.6
Number of peaks
36998 (qval < 1E-05)

mm9

Number of total reads
62055705
Reads aligned (%)
98.1
Duplicates removed (%)
71.6
Number of peaks
36978 (qval < 1E-05)

Base call quality data from DBCLS SRA