Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Adipocyte
Cell type
Brown adipocytes
NA
NA

Attributes by original data submitter

Sample

source_name
iBAT_D8_ISO_minus_FAIRE
ChIP
FAIRE
cell
immortalized brown adipocytes (iBATs)
treatment
vehicle

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked with 1.5 mM ethylene glycol bis(succinimidylsuccinate) (EGS) (Thermo Scientific) for 30 min at RT and subsequent fixation by adding 1% formaldehyde. After 10 min, fixation was terminated by adding 0.2 M glycine. Nuclear pellets were prepared for ChIP. Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
38509213
Reads aligned (%)
91.6
Duplicates removed (%)
18.3
Number of peaks
1074 (qval < 1E-05)

mm9

Number of total reads
38509213
Reads aligned (%)
91.4
Duplicates removed (%)
18.3
Number of peaks
1079 (qval < 1E-05)

Base call quality data from DBCLS SRA