Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic cortex
strain
BALB/c
developmental stage
E14.5 embryo
tissue
cerebral cortex
chip antibody
GFP antibody, vendor:Santa Cruz, cat#:sc-8334, lot#:H0612

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Tissue was cross-linked by 10 min of 1% formaldehyde treatment. After IP, stringent washes, and proteinase K treatment, DNA was extracted by standard phenol-chloroform extraction and ethanol precipitation. Library was prepared for the single end read Illumina HiSeq 2500 platform by Genewiz, Inc.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
24495706
Reads aligned (%)
58.9
Duplicates removed (%)
10.9
Number of peaks
530 (qval < 1E-05)

mm9

Number of total reads
24495706
Reads aligned (%)
58.7
Duplicates removed (%)
11.1
Number of peaks
547 (qval < 1E-05)

Base call quality data from DBCLS SRA