Curated Sample Data


Genome
mm9
Antigen Class
Input control
Antigen
Input control
Cell type Class
Blood
Cell type
Hematopoietic Stem Cells

Cell type information


MeSH Description
Progenitor cells from which all blood cells derived. They are found primarily in the bone marrow and also in small numbers in the peripheral blood.

Attributes by Original Data Submitter


source_name
Lin- HSC
strain
C57BL/6
genotype/variation
R26CreERT2;Ring1a-/-;Ring1bf/f;Cdkn2a-/-
antibody
Input.

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The LIN- HSCs were isolated from the bone marrow of the indicated mice using the hematopoietic progenitor enrichment kit (StemCell Technologies), infected and kept in liquid culture Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit (Part# 0801-0303).

Platform Information


instrument_model
Illumina Genome Analyzer II

External Database Query

Logs in read processing pipeline


Number of total reads
28210609
Reads aligned (%)
96.5
Duplicates removed (%)
13.4
Number of peaks
550 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA