Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
IRF3

Cell type

Cell type Class
Blood
Cell type
MM.1S
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

source_name
Myeloma cell line
cell line
MM1.S
antibody
IRF3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
MM1.S cells were fixed with 1% formaldehyde and nuclear extracts were collected. IRF3 was immunoprecipitated after shearing the chromatin below 500bp and pre-clear with protein G beads. IRF3 bound DNA was collected after reverse cross-linking. Libraries were prepared using NEBNext kit for Illumina (New England Biolabs) according to manufacturer's protocol

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
63457338
Reads aligned (%)
98.7
Duplicates removed (%)
20.7
Number of peaks
32951 (qval < 1E-05)

hg19

Number of total reads
63457338
Reads aligned (%)
97.9
Duplicates removed (%)
20.9
Number of peaks
32160 (qval < 1E-05)

Base call quality data from DBCLS SRA