Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARNT

Cell type

Cell type Class
Kidney
Cell type
786-O
Primary Tissue
Kidney
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Renal Cancer Cell Line
cell line
786-O
transfection
HIF-1a (pRRL-HIF-1a)
chip antibody
Novus Biological, NB100-110

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
22291630
Reads aligned (%)
42.9
Duplicates removed (%)
74.6
Number of peaks
1091 (qval < 1E-05)

hg38

Number of total reads
22291630
Reads aligned (%)
44.0
Duplicates removed (%)
74.2
Number of peaks
1098 (qval < 1E-05)

Base call quality data from DBCLS SRA