SRX964330
MTA3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

isolate
Caucasian
strain
MCF-7
age
69
sex
female
tissue
breast
biomaterial_provider
CM McGrath

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10478260
Reads aligned (%)
60.3
Duplicates removed (%)
46.9
Number of peaks
207 (qval < 1E-05)

hg19

Number of total reads
10478260
Reads aligned (%)
59.9
Duplicates removed (%)
47.3
Number of peaks
166 (qval < 1E-05)

Base call quality data from DBCLS SRA