SRX957905
GSM1635579: Ishikawa K27ac Rep1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Uterus
Cell type
Ishikawa
Primary Tissue
Uterus
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Cancer cell line
tumor type
Endometrial carcinomas
antibody
H3K27ac ab4729
cell line
Ishikawa

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin-IP Following NEB ChIP-seq library preparation kit (E6200S)

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
5343539
Reads aligned (%)
99.6
Duplicates removed (%)
1.7
Number of peaks
15293 (qval < 1E-05)

hg19

Number of total reads
5343539
Reads aligned (%)
99.4
Duplicates removed (%)
1.8
Number of peaks
15253 (qval < 1E-05)

Base call quality data from DBCLS SRA