SRX957901
GSM1635575: H358 K27ac Rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Prostate
Cell type
NCI-H358
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Non-Small Cell

Attributes by original data submitter

Sample

source_name
Cancer cell line
tumor type
Lung adenocarcinomas
antibody
H3K27ac ab4729
cell line
H358

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin-IP Following NEB ChIP-seq library preparation kit (E6200S)

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
3341335
Reads aligned (%)
99.1
Duplicates removed (%)
1.0
Number of peaks
5770 (qval < 1E-05)

hg19

Number of total reads
3341335
Reads aligned (%)
98.8
Duplicates removed (%)
1.1
Number of peaks
5800 (qval < 1E-05)

Base call quality data from DBCLS SRA