SRX956822
GSM1633923: Wildtype input DNA, replicates 1-3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
WT ES cells, input
strain/background
mixed
genotype/variation
eed fl/fl
cell type
embryonic stem (ES) cells
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates from 2e7 cells were sonicated and clarified by centrifugation and used in IP with antibodies specified. Libraries were prepared using Kapa Hyper ChIP kit for Illumina (catalogue number KK8500).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
59407352
Reads aligned (%)
95.0
Duplicates removed (%)
18.2
Number of peaks
644 (qval < 1E-05)

mm9

Number of total reads
59407352
Reads aligned (%)
94.8
Duplicates removed (%)
18.2
Number of peaks
688 (qval < 1E-05)

Base call quality data from DBCLS SRA