Antigen

Antigen Class

TFs and others

Antigen

Six4

Cell type

Cell type Class

Muscle

Cell type

C2C12

Primary Tissue

Skeletal Muscle

Tissue Diagnosis

NOS

Sample

source_name

C2C12 cells

cell line

shNS C2C12

antibody

anti-Six4

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

chromatin was prepared from formaldedyde cross-linked cells; shearing was done using a probe sonicator. Libraries were prepared by McGill University and Génome Québec Innovation Centre

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

100072360

Reads aligned (%)

94.0

Duplicates removed (%)

67.6

Number of peaks

33844 (qval < 1E-05)

mm9

Number of total reads

100072360

Reads aligned (%)

93.6

Duplicates removed (%)

67.6

Number of peaks

33592 (qval < 1E-05)