Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SMARCA4
wikigenes
PDBj
CellType: RH-4
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX9562886
GSM4932329: RH4 DMSO 4h BRG1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SMARCA4
Cell type
Cell type Class
Muscle
Cell type
RH-4
NA
NA
Attributes by original data submitter
Sample
source_name
RH4
cell line
RH4
diagnosis
rhabdomyosarcoma
treatment
4 hours treatment with 0.2% DMSO (Sigma, D8418)
genotype
wild type
antibody
anti-BRG1, Abcam, ab110641
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
After reverse crosslinking, ChIP DNA was purified using MinElute PCR Purification Kit (Qiagen). ChIPseq Library
Sequencing Platform
instrument_model
Illumina HiSeq 4000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
39391483
Reads aligned (%)
70.4
Duplicates removed (%)
11.8
Number of peaks
18045 (qval < 1E-05)
hg19
Number of total reads
39391483
Reads aligned (%)
69.5
Duplicates removed (%)
13.9
Number of peaks
17605 (qval < 1E-05)
Base call quality data from
DBCLS SRA