Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SETD1A

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1 cell line
chip antibody
SETD1A(ab70378, abcam)
clip antibody
none
treatment
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
THP-1 cells were crosslinked by formaldehyde followed by sonication and the lysates were clarified and protein-DNA complexes were isolated with indicated antibody. Then the DNA was purified for subsquential processes. Libraries were prepared according to NEB's instructions accompanying the NEBNext Ultra II DNA Library Prep Kit (E7103S) and NEBNext Multiplex Oligos for Illumina (E7335S).

Sequencing Platform

instrument_model
HiSeq X Ten

hg38

Number of total reads
18021457
Reads aligned (%)
96.8
Duplicates removed (%)
12.0
Number of peaks
2640 (qval < 1E-05)

hg19

Number of total reads
18021457
Reads aligned (%)
96.2
Duplicates removed (%)
12.1
Number of peaks
2474 (qval < 1E-05)

Base call quality data from DBCLS SRA