Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Pluripotent stem cell

Cell type

hESC derived neural cells

NA

NA

Sample

source_name

Day 8 differentiated cells

cell type

Day 8 differentiated cells

chip antibody

none

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

43402855

Reads aligned (%)

99.2

Duplicates removed (%)

4.4

Number of peaks

1353 (qval < 1E-05)

hg19

Number of total reads

43402855

Reads aligned (%)

98.3

Duplicates removed (%)

6.0

Number of peaks

1291 (qval < 1E-05)