Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MEF2C

Cell type

Cell type Class
Blood
Cell type
Loucy
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
LOUCY cell line without doxycyline
cell line
Loucy
genotype/variation
MEF2C overexpression on DL1
antibody
MEF2C

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed according to manufacturer's instructions (Simple ChIP Enzymatic Chromatin IP Kit, Cell Signaling #9003), with five 30sec. on 30sec. Off sonication cycles

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
12812072
Reads aligned (%)
84.3
Duplicates removed (%)
3.7
Number of peaks
977 (qval < 1E-05)

hg19

Number of total reads
12812072
Reads aligned (%)
83.7
Duplicates removed (%)
4.7
Number of peaks
917 (qval < 1E-05)

Base call quality data from DBCLS SRA