Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
HL60
cell line
leukemia cell line HL60
chip antibody
BRD4
treatment
SAHA
spike-in genome
dm3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA was extracted using TRIzol reagent. For H4ac ChIP, HL60 cells were cultured to a density of 7x10^5 cell/mL and treated with 1 µM SAHA or 0.01% DMSO for 1 h prior to ChIP protocol. Sequencing libraries were generated from DNA enriched by ChIP following the manufacturer's specification for the Tru-Seq library preparation kit (Illumina)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
35664187
Reads aligned (%)
97.8
Duplicates removed (%)
12.8
Number of peaks
2230 (qval < 1E-05)

hg19

Number of total reads
35664187
Reads aligned (%)
96.4
Duplicates removed (%)
17.8
Number of peaks
1358 (qval < 1E-05)

Base call quality data from DBCLS SRA