SRX9137654
GSM4792005: mK4 control Runx2 ChIP-seq rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Runx2

Cell type

Cell type Class
Embryonic fibroblast
Cell type
mK4
NA
NA

Attributes by original data submitter

Sample

source_name
mK4 cells
cell line
mK4
cell type
kidney metanephric mesenchyme cell line
genotype/variation
WT
chip antibody
Runx2 Cell Signaling #8486

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries following Illumina protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
51644958
Reads aligned (%)
70.3
Duplicates removed (%)
61.5
Number of peaks
1450 (qval < 1E-05)

mm9

Number of total reads
51644958
Reads aligned (%)
70.2
Duplicates removed (%)
61.5
Number of peaks
1420 (qval < 1E-05)

Base call quality data from DBCLS SRA