SRX8984318
GSM4735754: A673 siCT-Dh1 72h STAG2 spike R1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
STAG2

Cell type

Cell type Class
Bone
Cell type
A-673
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
Rhabdomyosarcoma

Attributes by original data submitter

Sample

source_name
Ewing sarcoma cell line (A673)
sirna
siCT-Dh1
antibody
STAG2
timepoint
72h

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The library were constructed using TruSeq ChIP library preparation kit (Illumina) according to manufacturer recommendations

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34696453
Reads aligned (%)
92.1
Duplicates removed (%)
23.4
Number of peaks
1372 (qval < 1E-05)

hg19

Number of total reads
34696453
Reads aligned (%)
91.1
Duplicates removed (%)
23.9
Number of peaks
825 (qval < 1E-05)

Base call quality data from DBCLS SRA