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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RAD21
wikigenes
PDBj
CellType: A-673
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX8984315
GSM4735751: A673 siCT-Dh1 72h RAD21 spike R1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
RAD21
Cell type
Cell type Class
Bone
Cell type
A-673
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
Rhabdomyosarcoma
Attributes by original data submitter
Sample
source_name
Ewing sarcoma cell line (A673)
sirna
siCT-Dh1
antibody
RAD21
timepoint
72h
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The library were constructed using TruSeq ChIP library preparation kit (Illumina) according to manufacturer recommendations
Sequencing Platform
instrument_model
Illumina NovaSeq 6000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
41837979
Reads aligned (%)
96.0
Duplicates removed (%)
31.9
Number of peaks
31801 (qval < 1E-05)
hg19
Number of total reads
41837979
Reads aligned (%)
95.1
Duplicates removed (%)
32.3
Number of peaks
30826 (qval < 1E-05)
Base call quality data from
DBCLS SRA