SRX8856760
CAPAN1 ATAC 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Adipocyte
Cell type
Capan-1
Primary Tissue
Pancreas
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

isolate
not applicable
age
not applicable
biomaterial_provider
ATCC HTB-79
sex
male
tissue
Pancreatic cancer
cell_line
CAPAN1
cell_type
Cancer

Sequenced DNA Library

library_name
K002000299_99400
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33722392
Reads aligned (%)
98.5
Duplicates removed (%)
54.2
Number of peaks
7532 (qval < 1E-05)

hg19

Number of total reads
33722392
Reads aligned (%)
98.3
Duplicates removed (%)
54.3
Number of peaks
7455 (qval < 1E-05)

Base call quality data from DBCLS SRA