SRX8856757
MiaPaca2 ATAC 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pancreas
Cell type
MIA Paca-2
Primary Tissue
Pancreas
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

isolate
not applicable
age
not applicable
biomaterial_provider
ATCC CRL-1420
sex
male
tissue
Pancreatic cancer
cell_line
MiaPaCa2
cell_type
Cancer

Sequenced DNA Library

library_name
K002000291_97928
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21404981
Reads aligned (%)
84.7
Duplicates removed (%)
48.3
Number of peaks
635 (qval < 1E-05)

hg19

Number of total reads
21404981
Reads aligned (%)
84.3
Duplicates removed (%)
48.5
Number of peaks
629 (qval < 1E-05)

Base call quality data from DBCLS SRA