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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Erg
wikigenes
PDBj
CellType: MLL-AF9 leukemic cell
ATCC
MeSH
RIKEN BRC
SRX884088
GSM1614789: Erg ChIP-Seq rep1; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Erg
Cell type
Cell type Class
Blood
Cell type
MLL-AF9 leukemic cell
NA
NA
Attributes by original data submitter
Sample
source_name
MLL-AF9/NrasG12D murine cell line
strain
C57BL/6
cell type
Acute myeloid leukemia
genotype
MLL-AF9/NrasG12D
antibody
Erg (sc-354; Santa Cruz)
treatment
no treatment
Sequenced DNA Library
library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests
Sequencing Platform
instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
168905936
Reads aligned (%)
91.3
Duplicates removed (%)
29.2
Number of peaks
59141 (qval < 1E-05)
mm9
Number of total reads
168905936
Reads aligned (%)
91.1
Duplicates removed (%)
29.0
Number of peaks
59216 (qval < 1E-05)
Base call quality data from
DBCLS SRA