Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD2

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
A549
cell type
human lung adenocarcinoma cell line
cell type
lung carcinoma
tissue
A549
treatment
untreated
antibody
chip BRD2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chip assay was conducte following the SimpleCHIP Enzymatic Chromatin IP kit (magnetic bead #9003) Libraries were prepared according to Illumina's instructions .

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
25098476
Reads aligned (%)
98.1
Duplicates removed (%)
29.0
Number of peaks
21231 (qval < 1E-05)

hg19

Number of total reads
25098476
Reads aligned (%)
97.5
Duplicates removed (%)
30.3
Number of peaks
21079 (qval < 1E-05)

Base call quality data from DBCLS SRA