SRX877594
GSM1611107: Rest Input ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4 T cells
strain
C57BL/6
tissue
Spleen
age
postnatal 8 weeks
treatment
rest
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and trancription factor-DNA complexes were isolated with antibody. ChIP DNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
37774013
Reads aligned (%)
70.9
Duplicates removed (%)
17.6
Number of peaks
659 (qval < 1E-05)

mm9

Number of total reads
37774013
Reads aligned (%)
70.7
Duplicates removed (%)
17.6
Number of peaks
819 (qval < 1E-05)

Base call quality data from DBCLS SRA