SRX877593
GSM1611106: Rest OcaB ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Pou2af1

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4 T cells
strain
C57BL/6
tissue
Spleen
age
postnatal 8 weeks
treatment
rest
antibody
OcaB
antibody vendor/catalog
SantaCruz, catalog# sc-955X

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and trancription factor-DNA complexes were isolated with antibody. ChIP DNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
36131308
Reads aligned (%)
66.5
Duplicates removed (%)
14.2
Number of peaks
9937 (qval < 1E-05)

mm9

Number of total reads
36131308
Reads aligned (%)
66.3
Duplicates removed (%)
14.2
Number of peaks
9875 (qval < 1E-05)

Base call quality data from DBCLS SRA