SRX8707815
AGO1 ChIP-seq MCF7 vehicle rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

isolate
Adult Caucasian woman
age
69 years
biomaterial_provider
ATCC
sex
female
tissue
mammary gland, breast; derived from metastatic site: pleural effusion
cell_line
MCF7
cell_type
epithelial
sample_type
ChIP-seq
treatment
Vehicle
replicate
biological replicate 2

Sequenced DNA Library

library_name
AGO1_MCF7_vehicle_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 550

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
61697796
Reads aligned (%)
96.4
Duplicates removed (%)
9.2
Number of peaks
1630 (qval < 1E-05)

hg19

Number of total reads
61697796
Reads aligned (%)
95.4
Duplicates removed (%)
10.9
Number of peaks
1323 (qval < 1E-05)

Base call quality data from DBCLS SRA