SRX8706938
GSM4665720: LNCaP-shRB E2F1 ChIP-seq DHT; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
E2F1

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP cell line
cell line
LNCaP cell line
knockdown
shRB
treatment
72 hrs CDT, 3 hrs 10 nM DHT
chip antibody
E2F1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed as previously described (McNair et al 2018) Library prep was performed as previously described (McNair et al 2018)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31175491
Reads aligned (%)
90.0
Duplicates removed (%)
57.0
Number of peaks
19266 (qval < 1E-05)

hg19

Number of total reads
31175491
Reads aligned (%)
89.7
Duplicates removed (%)
57.7
Number of peaks
19073 (qval < 1E-05)

Base call quality data from DBCLS SRA