SRX8688385
GSM4662104: BaF3 JAK2VF Input 3 (Input rep 3); Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Ba/F3
Primary Tissue
Blood
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
BaF3 Jak2V617F
cell type
proBcells derived BaF3 cells
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNAextraction kit according to the Manufacturer's protocol (Macherey Nagel) Magnetic Isolation Module

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
49308963
Reads aligned (%)
67.5
Duplicates removed (%)
17.7
Number of peaks
239 (qval < 1E-05)

mm9

Number of total reads
49308963
Reads aligned (%)
67.4
Duplicates removed (%)
17.8
Number of peaks
222 (qval < 1E-05)

Base call quality data from DBCLS SRA