Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Day10 Neurons
strain
159.2
cell type
Day10 Neurons
treatment
NMDA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Neurons were washed three times with BSS (balanced salt solution; 25 mM Tris, 120 mM NaCl, 15 mM glucose, 5.4 mM KCl, 1.8 mM CaCl2, 0.8 mM MgCl2, pH 7). After treating the neurons with 200 µM NMDA (Sigma) or only DMSO for 6 hours, cells were washed three times with BSS again and processed for RT-qPCR, ChIP and FAIRE analysis.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
28216288
Reads aligned (%)
98.4
Duplicates removed (%)
32.7
Number of peaks
9137 (qval < 1E-05)

mm9

Number of total reads
28216288
Reads aligned (%)
98.3
Duplicates removed (%)
32.8
Number of peaks
9134 (qval < 1E-05)

Base call quality data from DBCLS SRA