Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MDA-MB-134-VI
Primary Tissue
Breast
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Breast carcinoma cell line
cell line
MDA_MB134 breast carcinoma cell line
agent
Estrogen + DOX
chip antibody
ER (Ab10 Thermo Fisher Scientific, SC-543 Santa cruz)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was extracted with a sarkosyl based buffer and sonicated to a size range of 200-300 bp DNA sequencing libraries were prepared using the ThruPLEX-FD Prep Kit (Takara Bio USA)

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
20859755
Reads aligned (%)
97.0
Duplicates removed (%)
9.0
Number of peaks
3045 (qval < 1E-05)

hg19

Number of total reads
20859755
Reads aligned (%)
96.0
Duplicates removed (%)
9.3
Number of peaks
2941 (qval < 1E-05)

Base call quality data from DBCLS SRA