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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: JUNB
wikigenes
PDBj
CellType: A549
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX8616851
GSM4636845: A549 JunB FLAG cells treated with DEX for 12h - rep1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
JUNB
Cell type
Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
A549_JunB_FLAG cells treated with DEX for 12h - rep1
biomaterial_provider
ATCC
time point
12h
cell line
A549
tissue
adenocarcinomic human alveolar basal epithelial
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Harvested plates at timepoints (0, 1, 4, 8, 12) ChIP-seq libraries were prepared using a Kapa Hyper Prep kit.
Sequencing Platform
instrument_model
Illumina HiSeq 4000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
21545637
Reads aligned (%)
99.0
Duplicates removed (%)
10.5
Number of peaks
10403 (qval < 1E-05)
hg19
Number of total reads
21545637
Reads aligned (%)
98.3
Duplicates removed (%)
11.2
Number of peaks
10464 (qval < 1E-05)
Base call quality data from
DBCLS SRA