SRX8616802
GSM4636796: A549 cJun FLAG cells treated with DEX for 01h - rep3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
JUN

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
A549_cJun_FLAG cells treated with DEX for 01h - rep3
biomaterial_provider
ATCC
time point
01h
cell line
A549
tissue
adenocarcinomic human alveolar basal epithelial

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Harvested plates at timepoints (0, 1, 4, 8, 12) ChIP-seq libraries were prepared using a Kapa Hyper Prep kit.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17140960
Reads aligned (%)
98.8
Duplicates removed (%)
16.3
Number of peaks
5881 (qval < 1E-05)

hg19

Number of total reads
17140960
Reads aligned (%)
98.3
Duplicates removed (%)
16.7
Number of peaks
5922 (qval < 1E-05)

Base call quality data from DBCLS SRA