Antigen

Antigen Class

Unclassified

Antigen

Unclassified

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

source_name

mouse liver

strain

C57BL/6

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP-seq libraries were prepared according to Bernstein lab protocol with individual enzymes purchased from NEB. ATAC-seq: Protocol as described in Buenrostro et al (2015): doi:10.1002/0471142727.mb2129s109, using illumina barcoded primers for sequencing.

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

73878167

Reads aligned (%)

98.2

Duplicates removed (%)

15.1

Number of peaks

14873 (qval < 1E-05)

mm9

Number of total reads

73878167

Reads aligned (%)

98.1

Duplicates removed (%)

15.1

Number of peaks

14999 (qval < 1E-05)