SRX8536111
GSM4613171: GATA1 13nt rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA1

Cell type

Cell type Class
Blood
Cell type
HUDEP-2
NA
NA

Attributes by original data submitter

Sample

source_name
GATA1_13nt_rep2
cell line
Hudep2
antibody
GATA1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared using standard reagents from New England BioLabs for Illumina sequencing

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
39493478
Reads aligned (%)
96.6
Duplicates removed (%)
17.5
Number of peaks
12729 (qval < 1E-05)

hg19

Number of total reads
39493478
Reads aligned (%)
96.2
Duplicates removed (%)
17.7
Number of peaks
12616 (qval < 1E-05)

Base call quality data from DBCLS SRA