SRX8456545
LPS challenge Donor 1-2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Neutrophils
MeSH Description
Immature neutrophils.

Attributes by original data submitter

Sample

isolate
D1
age
30-40
biomaterial_provider
Yang Lab, Stanford Emergency Department
sex
female
tissue
blood
cell_type
neutrophils
treatment
LPS challenge Donor 1-2

Sequenced DNA Library

library_name
LPS-D1-2
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10785744
Reads aligned (%)
75.9
Duplicates removed (%)
9.3
Number of peaks
198 (qval < 1E-05)

hg19

Number of total reads
10785744
Reads aligned (%)
74.9
Duplicates removed (%)
9.5
Number of peaks
137 (qval < 1E-05)

Base call quality data from DBCLS SRA