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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: Neutrophils
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX8456535
HMGB1 challenge Donor 4-1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Blood
Cell type
Neutrophils
MeSH Description
Immature neutrophils.
Attributes by original data submitter
Sample
isolate
D4
age
30-40
biomaterial_provider
Yang Lab, Stanford Emergency Department
sex
female
tissue
blood
cell_type
neutrophils
treatment
HMGB1 challenge Donor 4-1
Sequenced DNA Library
library_name
HMGB1-D4-1
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
Sequencing Platform
instrument_model
HiSeq X Ten
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
16094061
Reads aligned (%)
69.7
Duplicates removed (%)
4.6
Number of peaks
341 (qval < 1E-05)
hg19
Number of total reads
16094061
Reads aligned (%)
68.9
Duplicates removed (%)
4.8
Number of peaks
334 (qval < 1E-05)
Base call quality data from
DBCLS SRA