SRX8456526
HMGB1 challenge Donor 1-1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Neutrophils
MeSH Description
Immature neutrophils.

Attributes by original data submitter

Sample

isolate
D1
age
30-40
biomaterial_provider
Yang Lab, Stanford Emergency Department
sex
female
tissue
blood
cell_type
neutrophils
treatment
HMGB1 challenge Donor 1-1

Sequenced DNA Library

library_name
HMGB1-D1-1
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45873760
Reads aligned (%)
87.3
Duplicates removed (%)
19.4
Number of peaks
6126 (qval < 1E-05)

hg19

Number of total reads
45873760
Reads aligned (%)
86.7
Duplicates removed (%)
19.6
Number of peaks
5824 (qval < 1E-05)

Base call quality data from DBCLS SRA