SRX8456492
noEC 4h challenge Donor 1-2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Neutrophils
MeSH Description
Immature neutrophils.

Attributes by original data submitter

Sample

isolate
D1
age
30-40
biomaterial_provider
Yang Lab, Stanford Emergency Department
sex
female
tissue
blood
cell_type
neutrophils
treatment
noEC 4h challenge Donor 1-2

Sequenced DNA Library

library_name
noEC4h-D1-2
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15731085
Reads aligned (%)
86.8
Duplicates removed (%)
19.4
Number of peaks
271 (qval < 1E-05)

hg19

Number of total reads
15731085
Reads aligned (%)
86.0
Duplicates removed (%)
19.9
Number of peaks
166 (qval < 1E-05)

Base call quality data from DBCLS SRA