SRX8456485
EC 1h challenge Donor 1-1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Neutrophils
MeSH Description
Immature neutrophils.

Attributes by original data submitter

Sample

isolate
D1
age
30-40
biomaterial_provider
Yang Lab, Stanford Emergency Department
sex
female
tissue
blood
cell_type
neutrophils
treatment
EC 1h challenge Donor 1-1

Sequenced DNA Library

library_name
EC1h-D1-1
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19835237
Reads aligned (%)
89.8
Duplicates removed (%)
9.6
Number of peaks
1280 (qval < 1E-05)

hg19

Number of total reads
19835237
Reads aligned (%)
89.2
Duplicates removed (%)
9.9
Number of peaks
1156 (qval < 1E-05)

Base call quality data from DBCLS SRA