SRX8456484
SA challenge 10^5 Donor 1-2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Neutrophils
MeSH Description
Immature neutrophils.

Attributes by original data submitter

Sample

isolate
D1
age
30-40
biomaterial_provider
Yang Lab, Stanford Emergency Department
sex
female
tissue
blood
cell_type
neutrophils
treatment
SA challenge 10^5 Donor 1-2

Sequenced DNA Library

library_name
SA-D1-10-5-2
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24685470
Reads aligned (%)
84.1
Duplicates removed (%)
29.8
Number of peaks
461 (qval < 1E-05)

hg19

Number of total reads
24685470
Reads aligned (%)
83.3
Duplicates removed (%)
30.2
Number of peaks
349 (qval < 1E-05)

Base call quality data from DBCLS SRA