Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

source_name

CTCF ChIP Sample 5 liver

disease state

metastatic castration resistant prostate cancer

tissue

liver

chip-antibody

Millipore, 07-729, lot#2887267

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Illumina Hi-seq 2500, 65bp single-end reads

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

30000333

Reads aligned (%)

90.8

Duplicates removed (%)

3.8

Number of peaks

2246 (qval < 1E-05)

hg19

Number of total reads

30000333

Reads aligned (%)

90.2

Duplicates removed (%)

4.7

Number of peaks

1881 (qval < 1E-05)