SRX8428851
GSM4579492: D4 KO Nanog [ChIP-seq]; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Nanog

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic Stem Cells (ESCs)
cell line
E14TG2
genotype/variation
Atg7 KO
treatment
ESC to EpiLC transition
time point
d4
chip antibody
Nanog

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed as described previously (Liu et al., 2015).

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
18888536
Reads aligned (%)
94.0
Duplicates removed (%)
43.2
Number of peaks
1799 (qval < 1E-05)

mm9

Number of total reads
18888536
Reads aligned (%)
93.9
Duplicates removed (%)
43.1
Number of peaks
1750 (qval < 1E-05)

Base call quality data from DBCLS SRA