SRX8428847
GSM4579488: D4 KO H3K27ac [ChIP-seq]; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic Stem Cells (ESCs)
cell line
E14TG2
genotype/variation
Atg7 KO
treatment
ESC to EpiLC transition
time point
d4
chip antibody
H3K27ac

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed as described previously (Liu et al., 2015).

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
23603272
Reads aligned (%)
95.3
Duplicates removed (%)
17.0
Number of peaks
7676 (qval < 1E-05)

mm9

Number of total reads
23603272
Reads aligned (%)
95.2
Duplicates removed (%)
16.9
Number of peaks
7618 (qval < 1E-05)

Base call quality data from DBCLS SRA