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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Nanog
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
SRX8428841
GSM4579482: D2 KO Nanog [ChIP-seq]; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Nanog
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
source_name
Embryonic Stem Cells (ESCs)
cell line
E14TG2
genotype/variation
Atg7 KO
treatment
ESC to EpiLC transition
time point
d2
chip antibody
Nanog
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed as described previously (Liu et al., 2015).
Sequencing Platform
instrument_model
HiSeq X Ten
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
26385944
Reads aligned (%)
97.2
Duplicates removed (%)
47.7
Number of peaks
2616 (qval < 1E-05)
mm9
Number of total reads
26385944
Reads aligned (%)
97.1
Duplicates removed (%)
47.6
Number of peaks
2583 (qval < 1E-05)
Base call quality data from
DBCLS SRA