Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Thymus
NA
NA

Attributes by original data submitter

Sample

source_name
Human postnatal thymus
tissue
postnatal thymus
cell population
gamma delta CD1-
donor
D2
run
R2
sort phenotype
TCRgd+ CD3+ CD1-

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
41560419
Reads aligned (%)
81.3
Duplicates removed (%)
28.0
Number of peaks
44321 (qval < 1E-05)

hg19

Number of total reads
41560419
Reads aligned (%)
80.8
Duplicates removed (%)
28.2
Number of peaks
44124 (qval < 1E-05)

Base call quality data from DBCLS SRA